Computational Hardware and Software Requirements

Computational hardware for image processing

  1. Hardware configuration recommended by SBGrid
  2. Relion Benchmark and hardware recommendation

Software packages for automation and image processing

  1. SerialEM: TEM automation and data collection
  2. MotionCor2: Motion correction
  3. crYOLO: Particle picking
  4. Relion: Image processing and 3-D reconstruction
  5. EMAN2: Image processing and 3-D reconstruction
  6. cryoSPARC: Image processing and 3-D reconstruction
  7. Cis-TEM: Image processing and 3-D reconstruction
  8. IMOD: Image processing and tomographic reconstruction
  9. UCSF Chimera: interactive visualization and analysis of molecular structures
  10. Coot: Macromolecular model building, model completion and validation
  11. Pymol: Molecular visualization system
  12. SBGrid: The SBGrid Software Suite contains 325+ Scientific software applications (includes all of the above software except SerialEM and cryoSPARC) for Linux and OS X.